The ministries of The Little Church on the Prairie are:
- Christian Education and Family Ministry: Adult Sunday School, Kerygma, Son Day Camp, Vacation Bible School, Preschool, Learning Center, Youth Group, Boy Scouts and Cub Scouts
- Fellowship: Prairie Schooners, Presbyterian Women, ROMEO Men’s Fellowship Group
- Outreach: Visitor Ministries, New Member’s Class, Community Partnerships
- Personnel Committee
- Mission: Short-Term Mission, Lakes Area FISH Food Bank, Moldova, Russia, Brazil
- Properties Ministry
- Worship Ministry: Traditional and Contemporary Worship, Praise Team, Chancel Choir, Prairie Bells, Accompanist, Sound Technician, Ushers, Greeters, Wedding Ministry
- The Board of Deacons
- Stephen Ministry
- Finance and Stewardship
